Here is my list for disc 3, in chronological order (but not how I'd sequence them).

Interstellar Overdrive
Cymbaline
Excerpts From the Atom Heart Mother Suite
A Pillow of Winds
Fearless
Free Four
Breathe
(*WYWH was already covered so I wouldn't want to pick the only two remaining songs*)
Run Like Hell
Mother
Not Now John
On the Turning Away
Take it Back
What Do You Want From Me?

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"People say we should get out of the way and let the young people through. Screw that!" -David Gilmour